Long ago, all humans lived beneath the sea. However, some people preferred the surface and abandoned living underwater permanently. As a consequence, they were stripped of their god-given protection called "Ena" which allowed them to breathe underwater. Over time, the rift between the denizens of the sea and of the surface widened, although contact between the two peoples still existed. Nagi no Asu kara follows the story of Hikari Sakishima and Manaka Mukaido, along with their childhood friends Chisaki Hiradaira and Kaname Isaki, who are forced to leave the sea and attend a school on the surface. There, the group also meets Tsumugu Kihara, a fellow student and fisherman who loves the sea. Hikari and his friends' lives are bound to change as they have to deal with the deep-seated hatred and discrimination between the people of sea and of the surface, the storms in their personal lives, as well as an impending tempest which may spell doom for all who dwell on the surface.

On live television, Mina Tepes, the ruler of all vampires, reveals the existence of her species to the world and states her plan to build a sanctuary in Japan for vampires, called the Vampire Bund. Using her family's wealth to pay off the nation's debt, they have agreed to let her build this safe-haven for her fellow creatures of the night. But not everyone is so easily swayed by Mina's influence, as her announcement brings about conflict with humans who believe that the queen's quest for peace is a façade. Akira Kaburagi does not believe in vampires and gets uneasy whenever they are brought up, although he has yet to realize why. Apart from suffering a head injury a year ago, he lives on blissfully until he meets Mina. She triggers within him memories of a life he had long forgotten, and he soon begins protecting her without understanding why. But Akira's secret is far stranger than he could have ever thought possible—he discovers that he is a werewolf, sworn from birth to protect the vampire queen, even if it costs him his life. Now, as these two dance a rondo of death in the Vampire Bund, Mina and Akira find out just how deep their bond goes.

In an accident, an ordinary boy, Wang Xiaoxiu, obtains a space system called "Superpower Cube" from a high-latitude cosmic civilization and gains extraordinary powers. When the school belle, Shen Yao, Wang Xiaoxiu’s longtime crush, confesses her love to him, the delinquent Sun Jun, who also has a crush on her, is provoked. Wang Xiaoxiu resolves the crisis with his wit and extraordinary powers, but it also brings more disasters as a result. Shen Yao is taken to the world of extraordinary beings by a mysterious person, and Wang Xiaoxiu embarks on a journey to rescue her. Fighting in the bizarre universe, he finds the meaning of fairness and justice on the path to becoming a peerless powerhouse.

Kousuke and Natsume have been friends since childhood, but as time goes on, the relationship between the two sixth graders seems strained as they keep avoiding each other. One day during the summer vacation, they visit a housing complex that is scheduled to be demolished. Having grown up there, the place holds a lot of memories, but while playing, they suddenly get caught up in a mysterious phenomenon. When they regain consciousness, they see an entire ocean before them as the housing complex has drifted into a mysterious sea with Kousuke, Natsume, and others in it. Will they be able to return to their previous world? A summer farewell journey begins...