The story revolves around Yuuki Kagami, a boy who enrolls in the academy of his dreams as a honors student — and is mistakenly put in the girls' dormitory where boys are prohibited. Faced with the possibility of having to leave the school, Yuuki has to dress up as a girl in the dormitory. On top of things, he ends up rooming with the female teacher Ayana Kakinozaka, who has to watch over him.

Yuuichi Katagiri has battled financial hardships his whole life but has learned to stay content and positive thanks to his close circle of friends. To keep a promise he made to them, Yuuichi saves up enough money to join them on the school trip. But when the gathered money mysteriously goes missing, suspicion falls on two of Yuuichi's friends: Shiho Sawaragi and Makoto Shibe, who were in charge of collecting the payments. Although innocent, Shiho and Makoto take responsibility for the failure to protect the money when no one else comes forward. A few days later, Yuuichi and his friends receive mysterious letters which trick each of them into meeting up. Upon arrival, they are ambushed and knocked unconscious. They wake up in a mysterious room in the presence of "Manabu-kun," a character from a controversial children's show that stopped airing due to its malicious content. He informs the group that one of them indirectly gathered them together in order to settle a large debt. They are to play a "friendship game": a series of games that will test the strength of their bond and trust in each other. As the group's faith wavers due to the growing number of secrets and betrayals, Yuuichi must figure out who of his "friends" he can actually trust and ultimately discover the identity of the traitor.

Continuation of the series.

The film is set in London at the end of the 19th century and after the attempted assassination of the Imperial princess in the television anime. The Empire is increasing counter-spy actions in the wake of the incident, and finds Control, the Commonwealth group in charge of covert operations against the Empire, at unease and suspecting its spy within the royal family as a double agent. Control assigns their spy ring Dove with a new mission to extract a secondhand bookstore owner and deliver him to Commonwealth hands. Ange, Dorothy, and Chise successfully spring the bookstore owner from an Imperial prison. Control also assigns Dove to make contact with Bishop, their spy within the royal family, to ascertain their loyalties. (Source: ANN)