Although traumatized by witnessing the murder of his parents by one of the Choushuu, Ichimura Tetsunosuke's thirst for revenge lead him to desire strength. At the age of 15, Tetsunosuke approached the Shinsengumi, wanting to become one of its members. However, Tetsunosuke lacked the skill, mind and will to emotionlessly cut down whoever threatened peace and the Shinsengumi. Even with the support of his brother Tatsunosuke and his newfound friends of the Shinsengumi, little did Tetsunosuke know the blood and pain he would have to face being part of this historical group.

Ayato transfers into a new school hoping for a fresh start. Sadly for him, the school turns up to be filled with delinquents, and the most feared of them all has his eye set on him. And it doesn't help, that whenever Ayato accidentally takes off his glasses, everyone around him suddenly becomes completely smitten by him.

The year is 1863 and as Japan's long festering wounds of political discord erupt into violent waves of street clashes and murder, the Tokugawa Shogunate sends a new force of masterless samurai called the Roshigumi to the aid of the Aizu forces in Kyoto. However the new "police" are anything but a cohesive force and assassination has already split them into two opposing factions. The stronger is led by the brutal Serizawa Kamo and the lesser by the more honorable but less assertive Isami Kondo. It is into this pack of wolves that Ryunosuke Ibuki is dragged by the rabid Serizawa. Forced to be a virtual slave by blood debt, he hates the samurai and everything they stand for. But as he sees how the other half of the samurai live, he begins to believe that there may still be a chance, for both himself and Japan, if only Kondo will step up and take down the mad dog Serizawa!

Take place 2 years after the last episode of the TV series.

Detective Sonia Summers are tracking Bem and the others. She reunited with Belo, who is fighting a dark organization alone. He brought her to Bem, but Bem doesn't remember anything and living in the city as an ordinary employee... or that is what he thought he was.